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- Tam, Y. Y., Torres-Guzman, J. C., Vizeacoumar, F. J., Smith, J. J., Marelli, M., Aitchison, J. D., and Rachubinski, R. A. (2003) Pex11-related proteins in peroxisome dynamics: a role for the novel peroxin Pex27p in controlling peroxisome size and number in Saccharomyces cerevisiae, Mol Biol Cell 14, 4089-4102
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- Lausted, C., Dahl, T., Warren, C., King, K., Smith, K., Johnson, M., Saleem, R., Aitchison, J., Hood, L., and Lasky, S. R (2004) POSaM: a fast, flexible, open-source, inkjet oligonucleotide synthesizer and microarrayer, Genome Biology 5, R58
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- Marelli, M., Smith, J. J., Jung, S., Yi, E., Nesvizhskii, A. I., Christmas, R. H., Saleem, R. A., Tam, Y. Y., Fagarasanu, A., Goodlett, D. R., Aebersold, R., Rachubinski, R. A., and Aitchison, J. D. (2004) Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane, J Cell Biol 167, 1099-1112
- Vizeacoumar, F. J., Torres-Guzman, J. C., Bouard, D., Aitchison, J. D., and Rachubinski, R. A. (2004) Pex30p, Pex31p, and Pex32p form a family of peroxisomal integral membrane proteins regulating peroxisome size and number in Saccharomyces cerevisiae, Mol Biol Cell 15, 665-677
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- Fagarasanu, M., Fagarasanu, A., Tam, Y. Y., Aitchison, J. D., and Rachubinski, R. A. (2005) Inp1p is a peroxisomal membrane protein required for peroxisome inheritance in Saccharomyces cerevisiae, J Cell Biol 169, 765-775
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- Sydorskyy, Y., Dilworth, D. J., Halloran, B., Yi, E. C., Makhnevych, T., Wozniak, R. W., and Aitchison, J. D. (2005) Nop53p is a novel nucleolar 60S ribosomal subunit biogenesis protein, Biochem J 388, 819-826
- Tackett, A. J., Dilworth, D. J., Davey, M. J., O'Donnell, M., Aitchison, J. D., Rout, M. P., and Chait, B. T. (2005) Proteomic and genomic characterization of chromatin complexes at a boundary, J Cell Biol 169, 35-47
- Fagarasanu, A., Fagarasanu, M., Eitzen, G. A., Aitchison, J. D., and Rachubinski, R. A. (2006) The peroxisomal membrane protein Inp2p is the peroxisome-specific receptor for the myosin V motor Myo2p of Saccharomyces cerevisiae, Dev Cell 10, 587-600
- Leslie, D. M., Timney, B., Rout, M. P., and Aitchison, J. D. (2006) Studying nuclear protein import in yeast, Methods 39, 291-308
- Niemistro, A., Selinummi, J., Saleem, R.., Shmulevich, I., Aitchison, J.D., Yli-Harja, O., (2006) Extraction of the Number of Peroxisomes in Yeast Cells by Automated Image Analysis, in 28th IEEE EMBS Annual International Conference, New York, NY.
- Orrell, D., Ramsey, S., Marelli, M., Smith, J.J., Petersen, T.W., de Atauri, P., Aitchison, J.D., Bolouri, H. (2006) Feedback control of stochastic noise in the yeast galactose utilization pathway, Physica D 217, 64-76
- Pedrioli, P. G., Raught, B., Zhang, X.D., Rogers, R., Aitchison, J.D., Matunis, M., Aebersold, R. (2006) Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software, Nature Methods 3, 533-539
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- Taverna, S. D., Ilin, S., Rogers, R. S., Tanny, J. C., Lavender, H., Li, H., Baker, L., Boyle, J., Blair, L. P., Chait, B. T., Patel, D. J., Aitchison, J. D., Tackett, A. J., and Allis, C. D. (2006) Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs, Mol Cell 24, 785-796
- Vizeacoumar, F. J., Vreden, W. N., Aitchison, J. D., and Rachubinski, R. A. (2006) Pex19p binds Pex30p and Pex32p at regions required for their peroxisomal localization but separate from their peroxisomal targeting signals, J Biol Chem 281, 14805-14812
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- Niemistö, A., Korpelainen, T., Saleem, R., Yli-Haja, O., Aitchison, J.D., Shmulevich, I., (2007) A K-Means Segmentation Method for Finding 2-D Object Areas Based on 3-D Image Stacks Obtained by Confocal Microscopy, in 29th International Conference of the IEEE Engineering in Medicine and Biology Society in conjunction with the Biennial Conference of the French Society of Biological and Medical Engineering, Lyon, France.
- Oeffinger, M., Wei, K. E., Rogers, R., Degrasse, J. A., Chait, B. T., Aitchison, J. D., and Rout, M. P. (2007) Comprehensive analysis of diverse ribonucleoprotein complexes, Nat Methods 4, 951-956
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- Aitchison, J. D., and Wozniak, R. W. (2007) Cell biology: Pore puzzle, Nature 450, 621-622
- Gradolatto, A., Rogers, R., Lavender, H., Taverna, S.D., Allis, C.D., Aitchison, J.D., Tackett, A.J. (2008) Saccaromyces cerevisiae Yta7 regulates histone gene expression, Genetics 179(1): 291-304
- Saleem, R.A., Knoblach, B., Mast, F.D., Smith, J.J., Boyle, J., Dobson, C.M., Long-O'Donnell, R., Rachubinski, R.A., Aitchison, J.D. (2008) Genome-wide analysis of signalling networks regulating fatty acid induced gene expression and organelle biogenesis, J Cell Biol 2: 281-292
* Co-corresponding Authors
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